IL_8G6J_196

3D structure

PDB id

8G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAUUAAG*CGC

Length

10 nucleotides

Bulged bases

8G6J|1|S2|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G6J_196 not in the Motif Atlas

Homologous match to IL_4V88_387

Geometric discrepancy: 0.0805

The information below is about IL_4V88_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77761.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

8G6J|1|S2|G|41
8G6J|1|S2|A|42
8G6J|1|S2|U|43
8G6J|1|S2|U|44
8G6J|1|S2|A|45
8G6J|1|S2|A|46
8G6J|1|S2|G|47
*
8G6J|1|S2|C|479
8G6J|1|S2|G|480
8G6J|1|S2|C|481

Current chains

Chain S2

18S rRNA

Nearby chains

Chain EF

Elongation factor 1-alpha 1

Chain SX

uS12