IL_8G6J_229

3D structure

PDB id

8G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUU(A2M)AAA*UC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G6J_229 not in the Motif Atlas

Geometric match to IL_4LFB_022

Geometric discrepancy: 0.1224

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

8G6J|1|S2|G|665
8G6J|1|S2|U|666
8G6J|1|S2|U|667
8G6J|1|S2|A2M|668
8G6J|1|S2|A|669
8G6J|1|S2|A|670
8G6J|1|S2|A|671
*
8G6J|1|S2|U|1161
8G6J|1|S2|C|1162

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SX

uS12

Chain Sa

40S ribosomal protein S26