IL_8G6J_262

3D structure

PDB id

8G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

G(OMG)U*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G6J_262 not in the Motif Atlas

Geometric match to IL_4V9F_105

Geometric discrepancy: 0.1563

The information below is about IL_4V9F_105

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

8G6J|1|S2|G|1327
8G6J|1|S2|OMG|1328
8G6J|1|S2|U|1329
*
8G6J|1|S2|G|1500
8G6J|1|S2|C|1501
8G6J|1|S2|C|1502

Current chains

Chain S2

18S rRNA

Nearby chains

Chain At

Transfer RNA; tRNA

Chain SD

40S ribosomal protein S3

Chain Sf

Ubiquitin-40S ribosomal protein S27a