IL_8G6J_273

3D structure

PDB id

8G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

ACU*AUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G6J_273 not in the Motif Atlas

Geometric match to IL_4P3T_001

Geometric discrepancy: 0.1222

The information below is about IL_4P3T_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

8G6J|1|S2|A|1537
8G6J|1|S2|C|1538
8G6J|1|S2|U|1539
*
8G6J|1|S2|A|1594
8G6J|1|S2|U|1595
8G6J|1|S2|U|1596

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SF

40S ribosomal protein S5

Chain SQ

40S ribosomal protein S16

Chain SS

40S ribosomal protein S18

Chain ST

40S ribosomal protein S19

Chain SZ

40S ribosomal protein S25