IL_8G6W_094

3D structure

PDB id

8G6W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli 70S ribosome complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site ortho-aminobenzoic acid charged NH-tRNAPhe

Experimental method

ELECTRON MICROSCOPY

Resolution

2.02 Å

Loop

Sequence

GGGG*CUUAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G6W_094 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.3335

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8G6W|1|a|G|880
8G6W|1|a|G|881
8G6W|1|a|G|882
8G6W|1|a|G|883
*
8G6W|1|a|C|893
8G6W|1|a|U|894
8G6W|1|a|U|895
8G6W|1|a|A|896
8G6W|1|a|C|897

Current chains

Chain a

23S rRNA

Nearby chains

Chain Y

Transfer RNA; tRNA