3D structure

PDB id
8G6W (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of WT E.coli 70S ribosome complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site ortho-aminobenzoic acid charged NH-tRNAPhe
Experimental method
ELECTRON MICROSCOPY
Resolution
2.02 Å

Loop

Sequence
AGAAU*GGAAU
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8G6W_174 not in the Motif Atlas
Homologous match to IL_5J7L_361
Geometric discrepancy: 0.0964
The information below is about IL_5J7L_361
Detailed Annotation
Triple non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_49751.4
Basepair signature
cWW-cWW-cWW-cWW-cWW
Number of instances in this motif group
16

Unit IDs

8G6W|1|A|A|673
8G6W|1|A|G|674
8G6W|1|A|A|675
8G6W|1|A|A|676
8G6W|1|A|U|677
*
8G6W|1|A|G|713
8G6W|1|A|G|714
8G6W|1|A|A|715
8G6W|1|A|A|716
8G6W|1|A|U|717

Current chains

Chain A
16S rRNA

Nearby chains

Chain F
30S ribosomal protein S6
Chain K
30S ribosomal protein S11
Chain R
30S ribosomal protein S18
Chain U
30S ribosomal protein S21
Chain c
50S ribosomal protein L2

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