3D structure

PDB id
8G6X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site meta-aminobenzoic acid charged NH-tRNAPhe
Experimental method
ELECTRON MICROSCOPY
Resolution
2.31 Å

Loop

Sequence
CCAGUAG*CGAACG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8G6X_007 not in the Motif Atlas
Homologous match to IL_5J7L_251
Geometric discrepancy: 0.0621
The information below is about IL_5J7L_251
Detailed Annotation
7x6 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_26307.2
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
9

Unit IDs

8G6X|1|a|C|239
8G6X|1|a|C|240
8G6X|1|a|A|241
8G6X|1|a|G|242
8G6X|1|a|U|243
8G6X|1|a|A|244
8G6X|1|a|G|245
*
8G6X|1|a|C|253
8G6X|1|a|G|254
8G6X|1|a|A|255
8G6X|1|a|A|256
8G6X|1|a|C|257
8G6X|1|a|G|258

Current chains

Chain a
23S rRNA

Nearby chains

Chain 2
50S ribosomal protein L35
Chain k
50S ribosomal protein L15

Coloring options:


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