IL_8G6X_031

3D structure

PDB id

8G6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site meta-aminobenzoic acid charged NH-tRNAPhe

Experimental method

ELECTRON MICROSCOPY

Resolution

2.31 Å

Loop

Sequence

GGG*UUAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G6X_031 not in the Motif Atlas

Geometric match to IL_5TBW_145

Geometric discrepancy: 0.3165

The information below is about IL_5TBW_145

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

8G6X|1|a|G|880
8G6X|1|a|G|881
8G6X|1|a|G|882
*
8G6X|1|a|U|894
8G6X|1|a|U|895
8G6X|1|a|A|896
8G6X|1|a|C|897

Current chains

Chain a

23S rRNA

Nearby chains

Chain Y

Transfer RNA; tRNA