IL_8G6X_078

3D structure

PDB id

8G6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site meta-aminobenzoic acid charged NH-tRNAPhe

Experimental method

ELECTRON MICROSCOPY

Resolution

2.31 Å

Loop

Sequence

GU(G7M)A*UCC

Length

7 nucleotides

Bulged bases

8G6X|1|a|U|2068

QA status

Modified nucleotides: G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G6X_078 not in the Motif Atlas

Geometric match to IL_5C5W_002

Geometric discrepancy: 0.1709

The information below is about IL_5C5W_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8G6X|1|a|G|2067
8G6X|1|a|U|2068
8G6X|1|a|G7M|2069
8G6X|1|a|A|2070
*
8G6X|1|a|U|2441
8G6X|1|a|C|2442
8G6X|1|a|C|2443

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain k

50S ribosomal protein L15