IL_8G6Y_019

3D structure

PDB id

8G6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe

Experimental method

ELECTRON MICROSCOPY

Resolution

2.09 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G6Y_019 not in the Motif Atlas

Geometric match to IL_5J7L_263

Geometric discrepancy: 0.0791

The information below is about IL_5J7L_263

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

8G6Y|1|a|U|703
8G6Y|1|a|G|704
8G6Y|1|a|A|705
8G6Y|1|a|A|706
8G6Y|1|a|G|707
*
8G6Y|1|a|U|724
8G6Y|1|a|G|725
8G6Y|1|a|G|726
8G6Y|1|a|A|727
8G6Y|1|a|G|728

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2