3D structure

PDB id
8G6Y (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe
Experimental method
ELECTRON MICROSCOPY
Resolution
2.09 Å

Loop

Sequence
UC*GAA
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8G6Y_025 not in the Motif Atlas
Homologous match to IL_5J7L_269
Geometric discrepancy: 0.105
The information below is about IL_5J7L_269
Detailed Annotation
Single stack bend
Broad Annotation
No text annotation
Motif group
IL_26793.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
16

Unit IDs

8G6Y|1|a|U|850
8G6Y|1|a|C|851
*
8G6Y|1|a|G|926
8G6Y|1|a|A|927
8G6Y|1|a|A|928

Current chains

Chain a
23S rRNA

Nearby chains

Chain y
50S ribosomal protein L30

Coloring options:


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