3D structure

PDB id
8G6Y (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe
Experimental method
ELECTRON MICROSCOPY
Resolution
2.09 Å

Loop

Sequence
GGGGUAG*CGAAUAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8G6Y_026 not in the Motif Atlas
Geometric match to IL_5J7L_270
Geometric discrepancy: 0.0559
The information below is about IL_5J7L_270
Detailed Annotation
7x7 Sarcin-Ricin with intercalated A; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_29198.2
Basepair signature
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
Number of instances in this motif group
4

Unit IDs

8G6Y|1|a|G|856
8G6Y|1|a|G|857
8G6Y|1|a|G|858
8G6Y|1|a|G|859
8G6Y|1|a|U|860
8G6Y|1|a|A|861
8G6Y|1|a|G|862
*
8G6Y|1|a|C|915
8G6Y|1|a|G|916
8G6Y|1|a|A|917
8G6Y|1|a|A|918
8G6Y|1|a|U|919
8G6Y|1|a|A|920
8G6Y|1|a|C|921

Current chains

Chain a
23S rRNA

Nearby chains

Chain b
5S ribosomal RNA; 5S rRNA
Chain l
50S ribosomal protein L16
Chain v
50S ribosomal protein L27
Chain y
50S ribosomal protein L30

Coloring options:


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