IL_8G6Y_055
3D structure
- PDB id
- 8G6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.09 Å
Loop
- Sequence
- UGUAG*UGAGG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8G6Y_055 not in the Motif Atlas
- Homologous match to IL_5J7L_300
- Geometric discrepancy: 0.2065
- The information below is about IL_5J7L_300
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_38862.4
- Basepair signature
- cWW-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8G6Y|1|a|U|1474
8G6Y|1|a|G|1475
8G6Y|1|a|U|1476
8G6Y|1|a|A|1477
8G6Y|1|a|G|1478
*
8G6Y|1|a|U|1513
8G6Y|1|a|G|1514
8G6Y|1|a|A|1515
8G6Y|1|a|G|1516
8G6Y|1|a|G|1517
Current chains
- Chain a
- 23S rRNA
Nearby chains
No other chains within 10ÅColoring options: