3D structure

PDB id
8G6Y (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe
Experimental method
ELECTRON MICROSCOPY
Resolution
2.09 Å

Loop

Sequence
AAU*AGGUU
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8G6Y_083 not in the Motif Atlas
Geometric match to IL_5J7L_332
Geometric discrepancy: 0.1421
The information below is about IL_5J7L_332
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_61476.2
Basepair signature
cWW-tSH-L-cWW-L
Number of instances in this motif group
7

Unit IDs

8G6Y|1|a|A|2297
8G6Y|1|a|A|2298
8G6Y|1|a|U|2299
*
8G6Y|1|a|A|2317
8G6Y|1|a|G|2318
8G6Y|1|a|G|2319
8G6Y|1|a|U|2320
8G6Y|1|a|U|2321

Current chains

Chain a
23S rRNA

Nearby chains

Chain b
5S ribosomal RNA; 5S rRNA
Chain f
50S ribosomal protein L5

Coloring options:


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