IL_8G6Y_091

3D structure

PDB id

8G6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe

Experimental method

ELECTRON MICROSCOPY

Resolution

2.09 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

8G6Y|1|a|G|2576, 8G6Y|1|a|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G6Y_091 not in the Motif Atlas

Homologous match to IL_5J7L_340

Geometric discrepancy: 0.0445

The information below is about IL_5J7L_340

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8G6Y|1|a|C|2510
8G6Y|1|a|U|2511
8G6Y|1|a|C|2512
*
8G6Y|1|a|G|2574
8G6Y|1|a|C|2575
8G6Y|1|a|G|2576
8G6Y|1|a|A|2577
8G6Y|1|a|G|2578

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain z

50S ribosomal protein L32