IL_8G6Y_097

3D structure

PDB id

8G6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe

Experimental method

ELECTRON MICROSCOPY

Resolution

2.09 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G6Y_097 not in the Motif Atlas

Geometric match to IL_5J7L_346

Geometric discrepancy: 0.0819

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8G6Y|1|a|C|2652
8G6Y|1|a|U|2653
8G6Y|1|a|A|2654
8G6Y|1|a|G|2655
8G6Y|1|a|U|2656
8G6Y|1|a|A|2657
8G6Y|1|a|C|2658
*
8G6Y|1|a|G|2663
8G6Y|1|a|G|2664
8G6Y|1|a|A|2665
8G6Y|1|a|C|2666
8G6Y|1|a|C|2667
8G6Y|1|a|G|2668

Current chains

Chain a

23S rRNA

Nearby chains

Chain g

50S ribosomal protein L6