IL_8G6Y_113

3D structure

PDB id

8G6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe

Experimental method

ELECTRON MICROSCOPY

Resolution

2.09 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G6Y_113 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0649

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8G6Y|1|a|U|1851
8G6Y|1|a|U|1852
8G6Y|1|a|A|1853
8G6Y|1|a|A|1854
8G6Y|1|a|U|1855
8G6Y|1|a|U|1856
8G6Y|1|a|G|1857
8G6Y|1|a|A|1858
8G6Y|1|a|U|1859
8G6Y|1|a|G|1860
*
8G6Y|1|a|U|1882
8G6Y|1|a|U|1883
8G6Y|1|a|G|1884
8G6Y|1|a|A|1885
8G6Y|1|a|U|1886
8G6Y|1|a|C|1887
8G6Y|1|a|G|1888
8G6Y|1|a|A|1889
8G6Y|1|a|A|1890
8G6Y|1|a|G|1891

Current chains

Chain a

23S rRNA

Nearby chains