IL_8G7P_017

3D structure

PDB id

8G7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli 70S ribosome in complex with EF-Tu and Ile-tRNAIle(LAU) bound to the cognate AUA codon (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8G7P|1|A|G|801, 8G7P|1|A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G7P_017 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.111

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8G7P|1|A|G|674
8G7P|1|A|A|675
8G7P|1|A|A|676
8G7P|1|A|A|677
8G7P|1|A|C|678
*
8G7P|1|A|G|799
8G7P|1|A|A|800
8G7P|1|A|G|801
8G7P|1|A|A|802
8G7P|1|A|U|803
8G7P|1|A|A|804
8G7P|1|A|G|805
8G7P|1|A|C|806

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain N

50S ribosomal protein L15