IL_8G7Q_017

3D structure

PDB id

8G7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli 70S ribosome in complex with EF-Tu and Ile-tRNAIle(LAU) bound to the near-cognate AUG codon (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8G7Q|1|A|G|801, 8G7Q|1|A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G7Q_017 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.1194

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8G7Q|1|A|G|674
8G7Q|1|A|A|675
8G7Q|1|A|A|676
8G7Q|1|A|A|677
8G7Q|1|A|C|678
*
8G7Q|1|A|G|799
8G7Q|1|A|A|800
8G7Q|1|A|G|801
8G7Q|1|A|A|802
8G7Q|1|A|U|803
8G7Q|1|A|A|804
8G7Q|1|A|G|805
8G7Q|1|A|C|806

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain N

50S ribosomal protein L15