3D structure

PDB id
8G7Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Escherichia coli 70S ribosome in complex with EF-Tu and Ile-tRNAIle(LAU) bound to the near-cognate AUG codon (Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GGGAAAC*GGAAGAUGUAACGGGGC
Length
24 nucleotides
Bulged bases
8G7Q|1|A|A|1127, 8G7Q|1|A|U|1130
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8G7Q_037 not in the Motif Atlas
Geometric match to IL_4WF9_040
Geometric discrepancy: 0.1007
The information below is about IL_4WF9_040
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_50715.3
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
Number of instances in this motif group
4

Unit IDs

8G7Q|1|A|G|1024
8G7Q|1|A|G|1025
8G7Q|1|A|G|1026
8G7Q|1|A|A|1027
8G7Q|1|A|A|1028
8G7Q|1|A|A|1029
8G7Q|1|A|C|1030
*
8G7Q|1|A|G|1124
8G7Q|1|A|G|1125
8G7Q|1|A|A|1126
8G7Q|1|A|A|1127
8G7Q|1|A|G|1128
8G7Q|1|A|A|1129
8G7Q|1|A|U|1130
8G7Q|1|A|G|1131
8G7Q|1|A|U|1132
8G7Q|1|A|A|1133
8G7Q|1|A|A|1134
8G7Q|1|A|C|1135
8G7Q|1|A|G|1136
8G7Q|1|A|G|1137
8G7Q|1|A|G|1138
8G7Q|1|A|G|1139
8G7Q|1|A|C|1140

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain 8
50S ribosomal protein L36
Chain D
50S ribosomal protein L3
Chain L
50S ribosomal protein L13
Chain O
50S ribosomal protein L16

Coloring options:


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