3D structure

PDB id
8G7Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Escherichia coli 70S ribosome in complex with EF-Tu and Ile-tRNAIle(LAU) bound to the near-cognate AUG codon (Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UAGAG*UGGA
Length
9 nucleotides
Bulged bases
8G7Q|1|a|A|665
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8G7Q_151 not in the Motif Atlas
Homologous match to IL_5J7L_033
Geometric discrepancy: 0.096
The information below is about IL_5J7L_033
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_85033.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
35

Unit IDs

8G7Q|1|a|U|662
8G7Q|1|a|A|663
8G7Q|1|a|G|664
8G7Q|1|a|A|665
8G7Q|1|a|G|666
*
8G7Q|1|a|U|740
8G7Q|1|a|G|741
8G7Q|1|a|G|742
8G7Q|1|a|A|743

Current chains

Chain a
16S Ribosomal RNA

Nearby chains

Chain f
30S ribosomal protein S6
Chain o
30S ribosomal protein S15
Chain r
30S ribosomal protein S18

Coloring options:


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