IL_8G7Q_186

3D structure

PDB id

8G7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli 70S ribosome in complex with EF-Tu and Ile-tRNAIle(LAU) bound to the near-cognate AUG codon (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G7Q_186 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1305

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8G7Q|1|A|U|1851
8G7Q|1|A|U|1852
8G7Q|1|A|A|1853
8G7Q|1|A|A|1854
8G7Q|1|A|U|1855
8G7Q|1|A|U|1856
8G7Q|1|A|G|1857
8G7Q|1|A|A|1858
8G7Q|1|A|U|1859
8G7Q|1|A|G|1860
*
8G7Q|1|A|U|1882
8G7Q|1|A|U|1883
8G7Q|1|A|G|1884
8G7Q|1|A|A|1885
8G7Q|1|A|U|1886
8G7Q|1|A|C|1887
8G7Q|1|A|G|1888
8G7Q|1|A|A|1889
8G7Q|1|A|A|1890
8G7Q|1|A|G|1891

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain y

Transfer RNA; tRNA