IL_8G7R_085

3D structure

PDB id

8G7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli 70S ribosome in complex with A-site tRNAIle(LAU) bound to the cognate AUA codon (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AUGUGUAGGAUAG*CCUU

Length

17 nucleotides

Bulged bases

8G7R|1|A|U|2111, 8G7R|1|A|G|2116, 8G7R|1|A|U|2118

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G7R_085 not in the Motif Atlas

Geometric match to IL_4V88_519

Geometric discrepancy: 0.3998

The information below is about IL_4V88_519

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

8G7R|1|A|A|2108
8G7R|1|A|U|2109
8G7R|1|A|G|2110
8G7R|1|A|U|2111
8G7R|1|A|G|2112
8G7R|1|A|U|2113
8G7R|1|A|A|2114
8G7R|1|A|G|2115
8G7R|1|A|G|2116
8G7R|1|A|A|2117
8G7R|1|A|U|2118
8G7R|1|A|A|2119
8G7R|1|A|G|2120
*
8G7R|1|A|C|2178
8G7R|1|A|C|2179
8G7R|1|A|U|2180
8G7R|1|A|U|2181

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain y

Transfer RNA; tRNA