IL_8G7S_006

3D structure

PDB id

8G7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli 70S ribosome in complex with P-site tRNAIle(LAU) bound to the cognate AUA codon (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G7S_006 not in the Motif Atlas

Homologous match to IL_7A0S_006

Geometric discrepancy: 0.0861

The information below is about IL_7A0S_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

8G7S|1|A|G|188
8G7S|1|A|G|189
8G7S|1|A|A|190
8G7S|1|A|A|191
8G7S|1|A|C|192
8G7S|1|A|U|193
8G7S|1|A|G|194
*
8G7S|1|A|C|201
8G7S|1|A|U|202
8G7S|1|A|A|203
8G7S|1|A|A|204
8G7S|1|A|G|205
8G7S|1|A|U|206
8G7S|1|A|A|207
8G7S|1|A|C|208

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L15

Chain Z

50S ribosomal protein L28