IL_8G7S_130

3D structure

PDB id

8G7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli 70S ribosome in complex with P-site tRNAIle(LAU) bound to the cognate AUA codon (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAA*UGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G7S_130 not in the Motif Atlas

Homologous match to IL_5J7L_009

Geometric discrepancy: 0.1161

The information below is about IL_5J7L_009

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

8G7S|1|a|G|128
8G7S|1|a|A|129
8G7S|1|a|A|130
8G7S|1|a|A|131
*
8G7S|1|a|U|231
8G7S|1|a|G|232
8G7S|1|a|C|233

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain q

30S ribosomal protein S17

Chain t

30S ribosomal protein S20