IL_8G7S_133

3D structure

PDB id

8G7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli 70S ribosome in complex with P-site tRNAIle(LAU) bound to the cognate AUA codon (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8G7S|1|a|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G7S_133 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1003

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

8G7S|1|a|G|147
8G7S|1|a|G|148
8G7S|1|a|A|149
8G7S|1|a|U|150
8G7S|1|a|A|151
8G7S|1|a|A|152
8G7S|1|a|C|153
*
8G7S|1|a|G|168
8G7S|1|a|C|169
8G7S|1|a|U|170
8G7S|1|a|A|171
8G7S|1|a|A|172
8G7S|1|a|U|173
8G7S|1|a|A|174
8G7S|1|a|C|175

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20