IL_8G7U_002

3D structure

PDB id

8G7U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of RNP end 2

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UC*GAA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G7U_002 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.2133

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

8G7U|1|X|U|12
8G7U|1|X|C|13
*
8G7U|1|Y|G|12
8G7U|1|Y|A|13
8G7U|1|Y|A|14

Current chains

Chain X

p3dsRNA24a

Chain Y

p3dsRNA24b

Nearby chains

Chain A

Antiviral innate immune response receptor RIG-I

Chain C

Antiviral innate immune response receptor RIG-I