IL_8GHU_007

3D structure

PDB id

8GHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methyltransferase RmtC bound to the 30S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGGG*CCGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8GHU_007 not in the Motif Atlas

Geometric match to IL_6CZR_168

Geometric discrepancy: 0.313

The information below is about IL_6CZR_168

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67743.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

9

Unit IDs

8GHU|1|a|G|144
8GHU|1|a|G|145
8GHU|1|a|G|146
8GHU|1|a|G|147
*
8GHU|1|a|C|175
8GHU|1|a|C|176
8GHU|1|a|G|177
8GHU|1|a|C|178

Current chains

Chain a

16S rRNA

Nearby chains

Chain t

30S ribosomal protein S20