IL_8GHU_028

3D structure

PDB id

8GHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methyltransferase RmtC bound to the 30S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAC*GUAC

Length

7 nucleotides

Bulged bases

8GHU|1|a|A|1394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8GHU_028 not in the Motif Atlas

Geometric match to IL_5TBW_016

Geometric discrepancy: 0.2111

The information below is about IL_5TBW_016

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8GHU|1|a|G|922
8GHU|1|a|A|923
8GHU|1|a|C|924
*
8GHU|1|a|G|1392
8GHU|1|a|U|1393
8GHU|1|a|A|1394
8GHU|1|a|C|1395

Current chains

Chain a

16S rRNA

Nearby chains

Chain e

30S ribosomal protein S5