IL_8GLP_008

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

AU*ACAUGU

Length

8 nucleotides

Bulged bases

8GLP|1|L5|U|150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8GLP_008 not in the Motif Atlas

Homologous match to IL_8C3A_007

Geometric discrepancy: 0.1455

The information below is about IL_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_19724.3

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

8GLP|1|L5|A|121
8GLP|1|L5|U|122
*
8GLP|1|L5|A|147
8GLP|1|L5|C|148
8GLP|1|L5|A|149
8GLP|1|L5|U|150
8GLP|1|L5|G|151
8GLP|1|L5|U|152

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LG

60S ribosomal protein L7a

Chain LN

60S ribosomal protein L15

Chain Lh

60S ribosomal protein L35