3D structure

PDB id
8GLP (explore in PDB, NAKB, or RNA 3D Hub)
Description
mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)
Experimental method
ELECTRON MICROSCOPY
Resolution
1.67 Å

Loop

Sequence
CC*GCG
Length
5 nucleotides
Bulged bases
8GLP|1|L5|C|143
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8GLP_009 not in the Motif Atlas
Geometric match to IL_1DQF_001
Geometric discrepancy: 0.2427
The information below is about IL_1DQF_001
Detailed Annotation
Single bulged C
Broad Annotation
No text annotation
Motif group
IL_61258.15
Basepair signature
cWW-L-cWW
Number of instances in this motif group
41

Unit IDs

8GLP|1|L5|C|125
8GLP|1|L5|C|126
*
8GLP|1|L5|G|142
8GLP|1|L5|C|143
8GLP|1|L5|G|144

Current chains

Chain L5
28S rRNA

Nearby chains

Chain L8
5.8S ribosomal RNA; 5.8S rRNA
Chain LG
60S ribosomal protein L7a
Chain LN
60S ribosomal protein L15
Chain LX
60S ribosomal protein L23a
Chain Lh
60S ribosomal protein L35

Coloring options:


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