IL_8GLP_017

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

CCGG*CG

Length

6 nucleotides

Bulged bases

8GLP|1|L5|C|340

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8GLP_017 not in the Motif Atlas

Geometric match to IL_7RQB_073

Geometric discrepancy: 0.2548

The information below is about IL_7RQB_073

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_88739.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

8GLP|1|L5|C|339
8GLP|1|L5|C|340
8GLP|1|L5|G|341
8GLP|1|L5|G|342
*
8GLP|1|L8|C|32
8GLP|1|L8|G|33

Current chains

Chain L5

28S rRNA

Chain L8

5.8S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LL

60S ribosomal protein L13

Chain LN

60S ribosomal protein L15

Chain Lj

60S ribosomal protein L37