IL_8GLP_038

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

CCGG*CCG

Length

7 nucleotides

Bulged bases

8GLP|1|L5|C|738, 8GLP|1|L5|G|739, 8GLP|1|L5|C|925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8GLP_038 not in the Motif Atlas

Geometric match to IL_5J7L_341

Geometric discrepancy: 0.189

The information below is about IL_5J7L_341

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

8GLP|1|L5|C|737
8GLP|1|L5|C|738
8GLP|1|L5|G|739
8GLP|1|L5|G|740
*
8GLP|1|L5|C|924
8GLP|1|L5|C|925
8GLP|1|L5|G|926

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LM

60S ribosomal protein L14