IL_8GLP_082

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

8GLP|1|L5|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8GLP_082 not in the Motif Atlas

Homologous match to IL_8C3A_057

Geometric discrepancy: 0.2015

The information below is about IL_8C3A_057

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

8GLP|1|L5|U|1957
8GLP|1|L5|A|1958
8GLP|1|L5|U|1959
8GLP|1|L5|A|1960
8GLP|1|L5|G|1961
8GLP|1|L5|A|1962
8GLP|1|L5|C|1963
8GLP|1|L5|A|1964
8GLP|1|L5|G|1965
*
8GLP|1|L5|C|2022
8GLP|1|L5|C|2023
8GLP|1|L5|G|2024
8GLP|1|L5|A|2025
8GLP|1|L5|A|2026

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LS

60S ribosomal protein L18a

Chain Lm

60S ribosomal protein L40 (eL40)