3D structure

PDB id
8GLP (explore in PDB, NAKB, or RNA 3D Hub)
Description
mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)
Experimental method
ELECTRON MICROSCOPY
Resolution
1.67 Å

Loop

Sequence
G(OMU)GAAC*GAAC
Length
10 nucleotides
Bulged bases
8GLP|1|L5|A|2428
QA status
Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8GLP_090 not in the Motif Atlas
Homologous match to IL_8C3A_066
Geometric discrepancy: 0.3095
The information below is about IL_8C3A_066
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_93630.2
Basepair signature
cWW-L-R-L-cWW-L-L
Number of instances in this motif group
4

Unit IDs

8GLP|1|L5|G|2414
8GLP|1|L5|OMU|2415
8GLP|1|L5|G|2416
8GLP|1|L5|A|2417
8GLP|1|L5|A|2418
8GLP|1|L5|C|2419
*
8GLP|1|L5|G|2427
8GLP|1|L5|A|2428
8GLP|1|L5|A|2429
8GLP|1|L5|C|2430

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LP
60S ribosomal protein L17
Chain LR
60S ribosomal protein L19
Chain Ll
60S ribosomal protein L39

Coloring options:


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