3D structure

PDB id
8GLP (explore in PDB, NAKB, or RNA 3D Hub)
Description
mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)
Experimental method
ELECTRON MICROSCOPY
Resolution
1.67 Å

Loop

Sequence
CAG*CGUGG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8GLP_138 not in the Motif Atlas
Homologous match to IL_5TBW_099
Geometric discrepancy: 0.0724
The information below is about IL_5TBW_099
Detailed Annotation
Isolated tHS basepair with bulges
Broad Annotation
No text annotation
Motif group
IL_71241.2
Basepair signature
cWW-cWW-tSH-cWW-L-L
Number of instances in this motif group
7

Unit IDs

8GLP|1|L5|C|4243
8GLP|1|L5|A|4244
8GLP|1|L5|G|4245
*
8GLP|1|L5|C|4263
8GLP|1|L5|G|4264
8GLP|1|L5|U|4265
8GLP|1|L5|G|4266
8GLP|1|L5|G|4267

Current chains

Chain L5
28S rRNA

Nearby chains

Chain L7
5S ribosomal RNA; 5S rRNA
Chain LD
60S ribosomal protein L5
Chain LJ
60S ribosomal protein L11
Chain LT
60S ribosomal protein L21

Coloring options:


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