IL_8GLP_143

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

8GLP|1|L5|U|4437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8GLP_143 not in the Motif Atlas

Homologous match to IL_5TBW_105

Geometric discrepancy: 0.0775

The information below is about IL_5TBW_105

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

8GLP|1|L5|G|4405
8GLP|1|L5|U|4406
8GLP|1|L5|G|4407
*
8GLP|1|L5|U|4435
8GLP|1|L5|U|4436
8GLP|1|L5|U|4437
8GLP|1|L5|U|4438
8GLP|1|L5|U|4439

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LI

60S ribosomal protein L10