IL_8GLP_198

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

UGGU*AA

Length

6 nucleotides

Bulged bases

8GLP|1|S2|G|113, 8GLP|1|S2|G|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8GLP_198 not in the Motif Atlas

Homologous match to IL_4V88_392

Geometric discrepancy: 0.1173

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

8GLP|1|S2|U|112
8GLP|1|S2|G|113
8GLP|1|S2|G|114
8GLP|1|S2|U|115
*
8GLP|1|S2|A|348
8GLP|1|S2|A|349

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SI

40S ribosomal protein S8

Chain SL

40S ribosomal protein S11