IL_8GLP_217

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

GAC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8GLP_217 not in the Motif Atlas

Geometric match to IL_1KFO_003

Geometric discrepancy: 0.2108

The information below is about IL_1KFO_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

259

Unit IDs

8GLP|1|S2|G|535
8GLP|1|S2|A|536
8GLP|1|S2|C|537
*
8GLP|1|S2|G|547
8GLP|1|S2|C|548
8GLP|1|S2|C|549

Current chains

Chain S2

18S rRNA

Nearby chains

Chain Se

FAU ubiquitin-like and ribosomal protein S30