IL_8GLP_223
3D structure
- PDB id
- 8GLP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.67 Å
Loop
- Sequence
- C(PSU)G*CAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8GLP_223 not in the Motif Atlas
- Geometric match to IL_5VCI_005
- Geometric discrepancy: 0.1797
- The information below is about IL_5VCI_005
- Detailed Annotation
- Not an internal loop
- Broad Annotation
- Not an internal loop
- Motif group
- IL_64417.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 18
Unit IDs
8GLP|1|S2|C|608
8GLP|1|S2|PSU|609
8GLP|1|S2|G|610
*
8GLP|1|S2|C|633
8GLP|1|S2|A|634
8GLP|1|S2|G|635
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SD
- 40S ribosomal protein S3
- Chain SX
- 40S ribosomal protein S23 (uS12)
- Chain Se
- FAU ubiquitin-like and ribosomal protein S30
Coloring options: