IL_8GLP_224

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

GUGCCAG*CGG(OMU)AAUUC

Length

16 nucleotides

Bulged bases

8GLP|1|S2|A|628, 8GLP|1|S2|U|630, 8GLP|1|S2|U|631

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52042.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8GLP|1|S2|G|611
8GLP|1|S2|U|612
8GLP|1|S2|G|613
8GLP|1|S2|C|614
8GLP|1|S2|C|615
8GLP|1|S2|A|616
8GLP|1|S2|G|617
*
8GLP|1|S2|C|624
8GLP|1|S2|G|625
8GLP|1|S2|G|626
8GLP|1|S2|OMU|627
8GLP|1|S2|A|628
8GLP|1|S2|A|629
8GLP|1|S2|U|630
8GLP|1|S2|U|631
8GLP|1|S2|C|632

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SD

40S ribosomal protein S3

Chain SX

40S ribosomal protein S23 (uS12)

Chain Se

FAU ubiquitin-like and ribosomal protein S30