IL_8GLP_239

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

GUAU*AGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8GLP_239 not in the Motif Atlas

Homologous match to IL_4V88_432

Geometric discrepancy: 0.0871

The information below is about IL_4V88_432

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

8GLP|1|S2|G|942
8GLP|1|S2|U|943
8GLP|1|S2|A|944
8GLP|1|S2|U|945
*
8GLP|1|S2|A|981
8GLP|1|S2|G|982
8GLP|1|S2|A|983
8GLP|1|S2|C|984

Current chains

Chain S2

18S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8 (uL2)

Chain SB

40S ribosomal protein S3a

Chain SO

40S ribosomal protein S14