IL_8GLP_242

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

8GLP|1|S2|C|1047
8GLP|1|S2|G|1048
8GLP|1|S2|A|1049
8GLP|1|S2|A|1050
8GLP|1|S2|G|1051
*
8GLP|1|S2|C|1067
8GLP|1|S2|G|1068
8GLP|1|S2|U|1069
8GLP|1|S2|A|1070
8GLP|1|S2|G|1071

Current chains

Chain S2

18S rRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LA

60S ribosomal protein L8 (uL2)

Chain SO

40S ribosomal protein S14

Chain Sa

40S ribosomal protein S26