IL_8GLP_250
3D structure
- PDB id
- 8GLP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.67 Å
Loop
- Sequence
- CGGA*U(PSU)G
- Length
- 7 nucleotides
- Bulged bases
- 8GLP|1|S2|G|1207
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8GLP_250 not in the Motif Atlas
- Geometric match to IL_7A0S_044
- Geometric discrepancy: 0.2478
- The information below is about IL_7A0S_044
- Detailed Annotation
- Intercalated cWW
- Broad Annotation
- Intercalated cWW
- Motif group
- IL_31737.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
8GLP|1|S2|C|1205
8GLP|1|S2|G|1206
8GLP|1|S2|G|1207
8GLP|1|S2|A|1208
*
8GLP|1|S2|U|1691
8GLP|1|S2|PSU|1692
8GLP|1|S2|G|1693
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SC
- 40S ribosomal protein S2
- Chain SO
- 40S ribosomal protein S14
- Chain Sa
- 40S ribosomal protein S26
- Chain mR
- mRNA
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