IL_8GLP_266

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

ACUA*U(OMU)CU

Length

8 nucleotides

Bulged bases

8GLP|1|S2|C|1403, 8GLP|1|S2|U|1404

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8GLP_266 not in the Motif Atlas

Geometric match to IL_4V88_456

Geometric discrepancy: 0.1373

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

8GLP|1|S2|A|1402
8GLP|1|S2|C|1403
8GLP|1|S2|U|1404
8GLP|1|S2|A|1405
*
8GLP|1|S2|U|1441
8GLP|1|S2|OMU|1442
8GLP|1|S2|C|1443
8GLP|1|S2|U|1444

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SQ

40S ribosomal protein S16

Chain SU

40S ribosomal protein S20

Chain Sg

Receptor of activated protein C kinase 1