3D structure

PDB id
8GLP (explore in PDB, NAKB, or RNA 3D Hub)
Description
mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)
Experimental method
ELECTRON MICROSCOPY
Resolution
1.67 Å

Loop

Sequence
U(PSU)U*(A2M)GA
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8GLP_298 not in the Motif Atlas
Homologous match to IL_8C3A_050
Geometric discrepancy: 0.3204
The information below is about IL_8C3A_050
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_52767.5
Basepair signature
cWW-L-R-cWW
Number of instances in this motif group
28

Unit IDs

8GLP|1|L5|U|1861
8GLP|1|L5|PSU|1862
8GLP|1|L5|U|1863
*
8GLP|1|L5|A2M|1871
8GLP|1|L5|G|1872
8GLP|1|L5|A|1873

Current chains

Chain L5
28S rRNA

Nearby chains

Chain L7
5S ribosomal RNA; 5S rRNA
Chain LI
60S ribosomal protein L10
Chain Lb
60S ribosomal protein L29

Coloring options:


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