IL_8GLP_305

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

GGAAGUCGG*CUGU(OMC)

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8GLP_305 not in the Motif Atlas

Homologous match to IL_8P9A_305

Geometric discrepancy: 0.0466

The information below is about IL_8P9A_305

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

8GLP|1|L5|G|2847
8GLP|1|L5|G|2848
8GLP|1|L5|A|2849
8GLP|1|L5|A|2850
8GLP|1|L5|G|2851
8GLP|1|L5|U|2852
8GLP|1|L5|C|2853
8GLP|1|L5|G|2854
8GLP|1|L5|G|2855
*
8GLP|1|L5|C|3837
8GLP|1|L5|U|3838
8GLP|1|L5|G|3839
8GLP|1|L5|U|3840
8GLP|1|L5|OMC|3841

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LV

60S ribosomal protein L23