IL_8GLP_313

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

(PSU)UG*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8GLP_313 not in the Motif Atlas

Homologous match to IL_8P9A_331

Geometric discrepancy: 0.3323

The information below is about IL_8P9A_331

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07039.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

8GLP|1|L5|PSU|4403
8GLP|1|L5|U|4404
8GLP|1|L5|G|4405
*
8GLP|1|L5|U|4439
8GLP|1|L5|G|4440

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

60S ribosomal protein L10