IL_8GLP_318

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

UGUA(PSU)(OMG)*CGAAG

Length

11 nucleotides

Bulged bases

8GLP|1|L5|U|4634, 8GLP|1|L5|PSU|4636

QA status

Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8GLP_318 not in the Motif Atlas

Homologous match to IL_8C3A_127

Geometric discrepancy: 0.2747

The information below is about IL_8C3A_127

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

8GLP|1|L5|U|4632
8GLP|1|L5|G|4633
8GLP|1|L5|U|4634
8GLP|1|L5|A|4635
8GLP|1|L5|PSU|4636
8GLP|1|L5|OMG|4637
*
8GLP|1|L5|C|4662
8GLP|1|L5|G|4663
8GLP|1|L5|A|4664
8GLP|1|L5|A|4665
8GLP|1|L5|G|4666

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LW

60S ribosomal protein L24

Chain Ld

60S ribosomal protein L31