3D structure

PDB id
8GLP (explore in PDB, NAKB, or RNA 3D Hub)
Description
mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)
Experimental method
ELECTRON MICROSCOPY
Resolution
1.67 Å

Loop

Sequence
UUA*U(A2M)
Length
5 nucleotides
Bulged bases
8GLP|1|S2|U|488
QA status
Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8GLP_326 not in the Motif Atlas
Homologous match to IL_8P9A_396
Geometric discrepancy: 0.1082
The information below is about IL_8P9A_396
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_89505.4
Basepair signature
cWW-L-cWW
Number of instances in this motif group
117

Unit IDs

8GLP|1|S2|U|487
8GLP|1|S2|U|488
8GLP|1|S2|A|489
*
8GLP|1|S2|U|511
8GLP|1|S2|A2M|512

Current chains

Chain S2
18S rRNA

Nearby chains

Chain SE
40S ribosomal protein S4, X isoform
Chain SJ
40S ribosomal protein S9
Chain SY
40S ribosomal protein S24

Coloring options:


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